Publications of NanoFun laboratories

 

 

The results of the research conducted in the NanoFun laboratories have already been partially published in highly rated international journals. We invite you to follow our list of publications.

 


 

14.02.2018

Remigiusz Worch, Anita Dudek, Joanna Krupa, Anna Szymaniec, Piotr Setny
Charged N-terminus of Influenza Fusion Peptide Facilitates Membrane Fusion
International Journal of Molecular Sciences, 2018, link

 


 

10.07.2017

Joanna Krajewska, Anna Modrak-Wójcik, Zbigniew J. Arent, Daniel Więckowski, Michal Zolkiewski, Agnieszka Bzowska, Sabina Kędzierska-Mieszkowska
Characterization of the molecular chaperone ClpB from the pathogenic spirochaete Leptospira interrogans

 


 

26.05.2017

 


 

04.2017

Katarzyna Janiszewska, Maciej Mazur, Stéphane Escrig, Anders Meibom and Jarosław Stolarski
Aragonitic scleractinian corals in the Cretaceous calcitic sea
Geology 2017; 45 (4): 319-322. doi: 10.1130/G38593.1, link

 


 

10.02.2017

Przemysław Gorzelak, Imran A. Rahman, Samuel Zamora, Arkadiusz Gąsiński, Jerzy Trzciński, Tomasz Brachaniec, Mariusz A. Salamon
Towards a Better Understanding of the Origins of Microlens Arrays in Mesozoic Ophiuroids and Asteroids
Evolutionary Biology, 2017, link

 


 

3.12.2016

Zbigniew M. Darżynkiewicz, Marta Pędziwiatr, Joanna Grzyb
"Quantum dots use both LUMO and surface trap electrons in photoreduction process"
Journal of Luminescence, 2016, link

 


 

5.11.2016

Remigiusz Worch, Joanna Krupa, Alicja Filipek, Anna Szymaniec, Piotr Setny
"Three conserved C-terminal residues of influenza fusion peptide alter its behavior at the membrane interface" Biochimica et Biophysica Acta, 2016, link

 


 

2.11.2016

Katarzyna Frankowiak, Xingchen T. Wang, Daniel M. Sigman, Anne M. Gothmann, Marcelo V. Kitahara, Maciej Mazur, Anders Meibom and Jarosław Stolarski
"Photosymbiosis and the expansion of shallow-water corals"
Sciences Advances, 2016, link



 

30.09.2016

Aiswarya Premchandar, Norbert Mucke, Jarosław Poznanski, Tatjana Wedig, Magdalena Kaus-Drobek, Harald Herrmann, Michał Dadlez
Structural Dynamics of the Vimentin Coiled-coil Contact Regions Involved in Filament Assembly as Revealed by Hydrogen-Deuterium Exchange
THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 291, NO. 48, pp. 24931–24950, November 25, 2016, link



 

13.09.2016

Andrzej Borkowski, Tomasz Cłapa, Mateusz Szala, Arkadiusz Gasinski, Marek Selwet
Synthesis of SiC/Ag/Cellulose Nanocomposite and Its Antibacterial Activity by Reactive Oxygen Species Generation,
Nanomaterials 2016, 6(9), 171; doi:10.3390/nano6090171, link



 

22.07.2016

Przemysław Gorzelak, Tomasz Krzykawski, Jarosław Stolarski
"Diagenesis of echinoderm skeletons: Constraints on paleoseawater Mg/Ca reconstructions"
Global and Planetary Change, 2016 link

 


 

27.06.2016

Mateusz Chwastyk, Mariusz Jaskolski, and Marek Cieplak
"The volume of cavities in proteins and virus capsids"
Proteins 2016; 84:1275–1286, link

 


 

6.07.2016

Kotlarek D, Worch R
"New Insight into Metal Ion-Driven Catalysis of Nucleic Acids by Influenza PA-Nter"
 PLOS One, 2016 link

 


 

28.05.2016

Anna Dąbrowska, Marcin Nyk, Remigiusz Worch, Joanna Grzyb
"Hydrophilic colloidal quantum dots with long peptide chain coats"
Colloids and Surfaces B: Biointerfaces. 2016 link

 


 

18.05.2016

Anna Maria Addamo, Agostina Vertino, Jaroslaw Stolarski, Ricardo García-Jiménez, Marco Taviani, and Annie Machordom
"Merging scleractinian genera: the overwhelming genetic similarity between solitary Desmophyllum and colonial Lophelia"
BMC Evolutionary Biology, 2016 link

 


 

5.04.2016

Andrzej Borkowski, Łukasz Ławniczak, Tomasz Cłapa, Dorota Narożna, MarekSelwet, Daria Pęziak, Bartosz Markiewicz, Łukasz Chrzanowski
Different antibacterial activity of novel theophylline-based ionic liquids – Growth kinetic and cytotoxicity studies
Ecotoxicology and Environmental Safety 130 (2016) 54–64, link

 


 

23.02.2016

Hou S, Trochimczyk P, Sun L, Wisniewska A, Kalwarczyk T, Zhang X, Wielgus-Kutrowska B, Bzowska A, Holyst R
"How can macromolecular crowding inhibit biological reactions? The enhanced formation of DNA nanoparticles"
Sci Rep. 2016. link

 


 

11.01.2016

Katarzyna Frankowiak, Sławomir Kret, Maciej Mazur, Anders Meibom, Marcelo V. Kitahara, Jarosław Stolarski
"Fine-Scale Skeletal Banding Can Distinguish Symbiotic from Asymbiotic Species among Modern and Fossil Scleractinian Corals"
PLOS ONE, 2016, link

 


 

2.12.2015

Remigiusz Worch, Karolina Piecyk, Anna Brygida Kolasa, Marzena Jankowska-Anyszka
"Translocation of 5′ mRNA cap analogue — peptide conjugates across the membranes of giant unilamellar vesicles"
Biochimica et Biophysica Acta, 2015, link

 


 

25.11.2015

Olga Sztatelman, Joanna Grzyb, Halina Gabryś, Agnieszka Katarzyna Banaś
"The effect of UV-B on Arabidopsis leaves depends on light conditions after treatment"
BCM Plant Biology, doi: 10.1186/s12870-015-0667-2 link

 


 

16.10.2015

Andrzej Borkowski, Filip Owczarek, Mateusz Szala, Marek Selwet
Interaction of Gram-Positive and Gram-Negative Bacteriawith Ceramic Nanomaterials Obtained by Combustion Synthesis – Adsorption and Cytotoxicity Studies
Polish Journal of Microbiology 2016, Vol. 65, No 2, 161–170, link



 

3.09.2015

Saša Kazazić, Branimir Bertoša, Marija Luić, Goran Mikleušević, Krzysztof Tarnowski, Michal Dadlez, Marta Narczyk, Agnieszka Bzowska
"New Insights into Active Site Conformation Dynamics of E. coli PNP Revealed by Combined H/D Exchange Approach and Molecular Dynamics Simulations"
J. Am. Soc. Mass Spectrom.  link

 


 

15.08.2015

I. Kamińska, K. Fronc, B. Sikora, M. Mouawad, A. Siemiarczuk, M. Szewczyk, K. Sobczak, T. Wojciechowski, W. Zaleszczyk, R. Minikayev, W. Paszkowicz, P. Stępień, P. Dziawa, K. Ciszak, D. Piątkowski, S. Maćkowski, M. Kaliszewski, M. Włodarski, J. Młyńczak, K. Kopczyński, M. Łapiński, D. Elbaum
"Upconverting/magnetic: Gd2O3:(Er3+,Yb3+,Zn2+) nanoparticles for biological applications: effect of Zn2+ doping"
RSC Adv. link

 


 

14.07.2015

T .Wrzesiński, M. Szelag, W. A. Cieślikowski, A. Ida, R. Giles, E. Zodro, J. Szumska, J. Poźniak, Z. Kwias, H. A. Bluyssen, J. Wesoły
"Expression of pre-selected TMEMs with predicted ER localization as potential classifiers of ccRCC tumors"
BMC Cancer link

 


 

13.07.2015

Joanna Grzyb, Ewelina Kalwarczyk, Remigiusz Worch
"Photoreduction of natural redox proteins by CdTe quantum dots is size-tunable and conjugation-independent"
RSC Advances link

 


 

25.03.2015

Anne M. Gothmann, Jarosław Stolarski, Jess F. Adkins, Blair Schoene, Kate J. Dennis, Daniel P. Schrag, Maciej Mazur, Michael L. Bender
"Fossil corals as an archive of secular variations in seawater chemistry since the Mesozoic"
Geochimica et Cosmochimica Acta, 160 (2015) 188–208, link

 


 

20.03.2015

N. Nedelko, S. Lewińska, A. Pashchenko, I. Radelytskyi, R. Diduszko, E. Zubov, W. Lisowski, J.W. Sobczak, K. Dyakonov, A. Ślawska-Waniewska, V. Dyakonov, H. Szymczak
"Magnetic properties and magnetocaloric effect in La0.7Sr0.3-xBixMnO3 manganites"
Journal of Alloys and Compounds 640 (2015) 433–439, link

 


 

01.02.2015

P. A. Misiuna, P. Dłużewski, T. Wojciechowski, S. Lewińska, A. Ślawska-Waniewska, A. Wawro, M. Wiater, T. Wojtowicz, L.T. Baczewski
"Magnetic and Structural Study of (ZnTe)/Co Core-Shell Nanowires Grown by Molecular Beam Epitaxy"
Acta Physica Polonica A link

 


 

19.12.2014

Sylwia Alaba, Pawel Piszczalka, Halina Pietrykowska, Andrzej M. Pacak, Izabela Sierocka, Przemyslaw W. Nuc, Kashmir Singh, Patrycja Plewka, Aleksandra Sulkowska, Artur Jarmolowski, Wojciech M. Karlowski and Zofia Szweykowska-Kulinska
"The liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants"
New Phtologist link

 


 

31.11.2014

Izabela Kamińska, Krzysztof Fronc, Bożena Sikora, Kamil Koper, Roman Minikayev, Wojciech Paszkowicz, Kamil Sobczak, Tomasz Wojciechowski, Mateusz Chwastyk, Anna Reszka, Bogdan J. Kowalski, Piotr Stępień, Danek Elbaum
"Synthesis of ZnAl2O4:(Er3+,Yb3+) spinel-type nanocrystalline upconverting luminescent marker in HeLa carcinoma cells, using a combustion aerosol method route"
RSC Advances (link)

 


 

27.11.2014

"Fluorescence Resonance Energy Transfer between ZnO/MgO/Carboxymethyl-β-cyclodextrin and Nile Red in HeLa cells - biosensing applications"
RCS Advances (link)

 


 

19.11.2014

Natalia Nedelko, Arkadiusz Kornowicz, Iwona Justyniak, Pavlo Aleshkevych, Daniel Prochowicz, Piotr Krupiński, Orest Dorosh, Anna Ślawska-Waniewska, and Janusz Lewiński
"Supramolecular Control over Molecular Magnetic Materials: γ-Cyclodextrin-Templated Grid of Cobalt(II) Single-Ion Magnets"
Inorganic Chemistry link

 


 

1.10.2014

I. Zaytseva, A. Abal'oshev, P. Dluzewski, R. Minikayev, M. Z. Cieplak L.Y.Zhu, C.L.Chien
"Ultrathin niobium in the Si/Nb/Si trilayers”
Acta Phys. Pol. A link
 
V.L. Bezusyy, D.J. Gawryluk, A. Malinowski, M. Berkowski and M.Z. Cieplak
"Influence of Iron Substitutions on the Transport Properties of FeTe0.65Se0.35 Single Crystals”
Acta Phys. Pol. A link
 
Y. Syryanyy, M. Aleszkiewicz, Marta Z. Cieplak, L.Y. Zhu and C.L. Chien
“Phase Diagram and Activation Energy for Vortex Pinning, in Nb/(Co,Pd) Superconductor- Ferromagnet Bilayer”
Acta Phys. Pol. A link

 


 

22.08.2014

I. Zaytseva, O. Abal’oshev , P. Dłużewski, W. Paszkowicz, L. Y. Zhu, C. L. Chien, M. Kończykowski and Marta Z. Cieplak
“Negative Hall coefficient of ultrathin niobium in Si/Nb/Si trilayers”
Phys. Rev. B link

 


 

26.03.2014

Krzysztof Tarnowski, Kinga Fituch, Roman H. Szczepanowski, Michal Dadlez, Magdalena Kaus-Drobek
"Patterns of structural dynamics in RACK1 protein retained throughout evolution: A hydrogen-deuterium exchange study of three orthologs"
Protein Science (link)

 


 

3.03.2014

Branimir Bertoša, Goran Mikleušević, Beata Wielgus-Kutrowska, Marta Narczyk, Matea Hajnić, Ivana Leščić Ašler, Sanja Tomić, Marija Luić, Agnieszka Bzowska
"Homooligomerization is needed for stability: a molecular modelling and solution study of E. coli purine nucleoside phosphorylase"
FEBS Journal (link)

 


 

22.02.2015

Roberto Arrigoni, Yuko F. Kitano, Jaroslaw Stolarski, Bert W. Hoeksema, Hironobu Fukami,Fabrizio Stefani, Paolo Galli, Simone Montano, Elisa Castoldiand Francesca Benzoni
"A phylogeny reconstruction of the Dendrophylliidae (Cnidaria, Scleractinia) based on molecular and micromorphological criteria, and its ecological implications"
Zoologica Scripta (link)

 


 

11.02.2014

Carla Albetina Demarchi, Aline Debrassi, Fátima de Campos Buzzi, Rogério Corrêa, Valdir Cechinel Filho, Clovis Antonio Rodrigues, Natalia Nedelko, Pavlo Demchenko, Anna Ślawska-Waniewska, Piotr Dłużewski, Jean-Marc Greneche
"A magnetic nanogel based on O-carboxymethylchitosan for antitumor drug delivery: Synthesis, characterization and in vitro drug release"
Soft Mater (link)

 


 

10.02.2014

Nenad Ban, Roland Beckmann, Jamie HD Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis LJ Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton, Michael A McAlear, Peter B Moore, Harry F Noller, Joaquin Ortega, Vikram Govind Panse,
V Ramakrishnan, Christian MT Spahn, Thomas A Steitz, Marek Tchorzewski, David Tollervey, Alan J Warren, James R Williamson, Daniel Wilson, Ada Yonath, Marat Yusupov
"A new system for naming ribosomal proteins"
Current Opinion in Structural Biology (link)

 


 

6.02.2014

Mateusz Chwastyk, Albert Galera-Prat, Mateusz Sikora, Ángel Gómez-Sicilia, Mariano Carrión-Vázquez, Marek Cieplak
"Theoretical tests of the mechanical protection strategy in protein nanomechanics"
Proteins: Structure, Function, and Bioinformatics (link)

 


 

1.02.2014

M. Szala, A. Borkowski
"Toxicity assessment of SiC nanofibers and nanorods against bacteria"
Ecotoxicology and Environmental Safety (link)

 


 

13.01.2014

Marek Cieplak
"Mechanostability of virus capsids and their proteins in structure-based Models"
Computational methods to study the structure and dynamics of biomolecules and biomolecular processes - from bioinformatics to molecular quantum mechanics - Spriger (link)

 


 

7.01.2014

Mateusz Chwastyk, Mariusz Jaskolski, Marek Cieplak
"Structure-based analysis of thermodynamic and mechanical properties of cavity-containing proteins – case study of plant pathogenesis-related proteins of class 10"
FEBS Journal (link)

 


 

20.12.2013

Marek Cieplak, Jayanth R. Banavar
"Energy landscape and dynamics of an HP lattice model of proteins – the role of anisotropy"
Europhysics Letters (link)

 


 

13.12.2013

Elżbieta Zodro, Marcin Jaroszewski, Agnieszka Ida, Tomasz Wrzesiński, Zbigniew Kwias, Hans Bluyssen, Joanna Wesoly
"FUT11 as a potential biomarker of clear cell renal cell carcinoma progression based on meta-analysis of gene expression data"
Tumour Biology (link)

 


 

10.12.2013

Anna Modrak-Wójcik, Michał Górka, Katarzyna Niedźwiecka, Konrad Zdanowski, Joanna Żuberek, Anna Niedżwiecka, Ryszard Stolarski
"Eukaryotic translation initiation is controlled by cooperativity effects within ternary complexes of 4E-BP1, eIF4E, and the mRNA 5′ cap"
FEBS Letters (link)

 


 

5.12.2013

Przemysław Gorzelak and Samuel Zamora
"Stereom microstructures of Cambrian echinoderms revealed by cathodoluminescence (CL)"
Palaeontologia Electronica (link)

 


 

28.11.2013

Krzysztof Sozański, Agnieszka Wiśniewska, Tomasz Kalwarczyk, Robert Hołyst
"Activation Energy for Mobility of Dyes and Proteins in Polymer Solutions: From Diffusion of Single Particles to Macroscale Flow"
Physical Review Letters (link)

 


 

22.11.2013

A. Borkowski A, M. Szala
"Toxic effect assessment of aminotetrazoles and high-energetic azotetrazole salts on soil microbial respiration"
Chemistry and Ecology (link)

 


 

23.10.2013

Marek Cieplak, Jayanth R. Banavar
"Energy landscape and dynamics of proteins: An exact analysis of a simplified lattice model "
Physical Review E (link)

 


 

21.10.2013

Ivan Sabath, Aleksandra Skrajna, Xiao-cui Yang, Michał Dadlez, William F. Marzluff, Zbigniew Dominski
"3’ end processing of histone pre-mRNAs in Drosophila: U7 snRNP is associated with FLASH and polyadenylation factors"
RNA (link)

 


 

1.09.2013

A. Borkowski, J. Parafiniuk, D. Wolicka, P. Kowalczyk
"Geomicrobiology of Acid Mine Drainage in the weathering zone of pyrite-bearing schists in the Rudawy Janowickie Mountains (Poland)"
Geological Quarterly (link)

 


 

20.07.2013

Sławomir Jakiela, Tomasz S. Kamiński, Olgierd Cybulski, Douglas B. Weibel, Piotr Garstecki
"Bacterial Growth and Adaptation in Microdroplet Chemostats"
Angewandte Chemie Int. Ed. (link)

 


 

28.06.2013

Janik E, Bednarska J, Zubik M, Puzio M, Luchowski R, Grudzinski W, Mazur R, Garstka M, Maksymiec W, Kulik A, Dietler G,
Gruszecki WI
"Molecular architecture of plant thylakoids under physiological and light stress conditions: a study of lipid-light-harvesting complex II model membranes"
PLANT CELL (link)

 


 

14.06.2013

Grzegorz Nawrocki, Marek Cieplak
"Amino acids and proteins at ZnO–water interfaces in molecular dynamics simulations"
Physical Chemistry Chemical Physics (link)

 


 

13.06.2013

Marek Cieplak, Mark O. Robbins
"Nanoindentation of 35 virus capsids in a molecular model: Relating mechanical properties to structure"
PLOS ONE (link)

 


 

7.06.2013

templates/nanofun/photo/article/PALAIOS_cover.jpgKatarzyna Frankowiak, Maciej Mazur, Anne M. Gothmann, Jarosław Stolarski
"DIAGENETIC ALTERATION OF TRIASSIC CORAL FROM THE ARAGONITE KONSERVATLAGERSTATTE IN ALAKIR CAY, TURKEY: IMPLICATIONS FOR GEOCHEMICAL MEASUREMENTS"
PALAIOS (Emphazing the Impact of Life on Earth's History) (link)

 

 

 

 

 

 

 


 

13.05.2013

Bożena Sikora, Krzysztof Fronc, Izabela Kamińska, Kamil Koper, Sebastian Szewczyk, Bohdan Paterczyk, Tomasz Wojciechowski, Kamil Sobczak, Roman Minikayev, Wojciech Paszkowicz, Piotr Stępień, Danek Elbaum
"Transport of NaYF4:Er3+, Yb3+ up-converting nanoparticles into HeLa cells"
Nanotechnology (link)

 


 

24.04.2013

Krzysztof Szczepaniak, Remigiusz Worch, Joanna Grzyb
"Ferredoxin:NADPC+ oxidoreductase in junction with CdSe/ZnS quantum dots: characteristics of an enzymatically active nanohybrid"
Journal of Physics: Condensed Matter (link)

 


 

9.04.2013

Damien Thompson, Mateusz Sikora, Piotr Szymczak, Marek Cieplak
"A multi-scale molecular dynamics study of micron-size supraparticle assembly from alkyl-coated 30 nm nanoparticles"
Physical Chemistry Chemical Physics (link)

 



13.03.2013

A. Borkowski, P. Rydelek, M. Szala
"Adsorption studies of azotetrazolate and 3,6-dihydrazinotetrazine on peat"
Journal of Environmental Science and Health, Part A (link)

 


 

8.03.2013

Mateusz Sikora, Marka Cieplaka
"Formation of cystine slipknots in dimeric proteins”
PLOS ONE (link)

 


 

5.03.2013

templates/nanofun/photo/article/Jourofmorph_cover.jpgKatarzyna Janiszewska, Jakub Jaroszewicz, Jarosław Stolarski
"Skeletal Ontogeny in Basal Scleractinian Micrabaciid Corals"
Journal of Morphology (link)

 

 

 

 

 

 

 

 

 


 

10.01.2013

Rożek A, Kowalczyk P, Wolicka D.
"Revealing sulfate-reducing microorganisms in oilfield waters (Flysch Carpathians, south-eastern Poland)"
Geomicrobiology Journal. 2013; 30(3): 268-277. (link)

 


 

13.11.2012

Mateusz Sikora, Marka Cieplaka
"Cystine plug and other novel mechanisms of large mechanical stability in dimeric proteins"
Physical Review Letters (link)

 


 

15.10.2012

Yang XC, Sabath I, Dębski J, Kaus-Drobek M, Dadlez M, Marzluff WF, Dominski Z.
"A complex containing the CPSF73 endonuclease and other polyadenylation factors associates with U7 snRNP and is recruited to histone pre-mRNA for 3'-end processing"
Molecular and Cellular Biology (link)

 


 

12.05.2012

Sen Hou, Stefan A. Wieczorek, Tomasz S. Kaminski, Natalia Ziebacz, Marcin Tabaka, Nohemy A. Sorto, Marie H. Foss, Jared T. Shaw, Martin Thanbichler, Douglas B. Weibel, Krzysztof Nieznanski, Robert Holyst, Piotr Garstecki
"Characterization of Caulobacter crescentus FtsZ Protein Using Dynamic Light Scattering"
The Jouranl of Biological Chemistry (link)

 


 

1.05.2012

Wolicka D., Jarzynowska L.
"Microbiological reduction of sulphates in salty environments and mineralogical characterization of the transformation products"
Geomicrobiology Journal (link)

 


 

16.02.2012

A. Borkowski, M. Szala, D. Wolicka
"Influence of 1,2,4,5-tetrazine derivatives on growth of bacterial consortium isolated from soil"
Chemistry and Ecology (link)

 


 

7.02.2012

Joanna Grzyb, Fei Xu, Vikas Nanda, Renata Łuczkowska, Eduard Reijerse, Wolfgang Lubitz, Dror Noy
"Empirical and computational design of iron-sulfur cluster proteins"
Biochimica et Biophysica Acta (link)

 


 

5.01.2012

Mateusz Sikora, Dieter Adam, Piotr M. Korczyk, Anna Prodi-Schwab, Piotr Szymczak, Marek Cieplak
"Geometrical and electrical properties of indium tin oxide clusters in ink dispersions"
Langmuir (link)

 


 

25.04.2011

Tomasz Kalwarczyk, Natalia Ziębacz, Anna Bielejewska, Ewa Zaboklicka, Kaloian Koynov, Jędrzej Szymański, Agnieszka Wilk,Adam Patkowski, Jacek Gapiński, Hans-Jürgen Butt, Robert Hołyst
"Comparative Analysis of Viscosity of Complex Liquids and Cytoplasm of Mammalian Cells at the Nanoscale
Nano Letters (link)

 


 

11.07.2010

Richarda Stevensona about Ammono company
"The World's Best Gallium Nitride"
IEEE Spectrum (link)

 

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